Protein Info for PFR28_04273 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 PF08668: HDOD" amino acids 20 to 213 (194 residues), 179.6 bits, see alignment E=5.1e-57 PF01966: HD" amino acids 118 to 239 (122 residues), 24.1 bits, see alignment E=3.9e-09

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a5351)

Predicted SEED Role

"Predicted signal transduction protein" in subsystem Flagellar motility

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>PFR28_04273 hypothetical protein (Pseudomonas sp. RS175)
MSKELSAEQIQQSLQGISVPPQPQIMVDLQMEQYMPDPDLETIAKLISQDPGLSGALLKI
VNSPYYGLRNKITSIQRAVNLLGSRSIINLINAQSIKGELHDDTIVTLNRFWDTAQDVAM
TCLTLAKRVGLENGDEAYALGLFHDCGVPLMLKQFPNYMSVLEQAYASASAECRVVDTEN
RLFNTNHAVVGYYTSKSWRLPDHVSQAIANHHNALAIFSDESSRNNSQLKNLLAILKMAE
HICASYRVLGNQAEDHEWACVGDLVLDYIGLSEYDFQTQKQEIGDLATR