Protein Info for PFR28_04085 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 TIGR02110: coenzyme PQQ biosynthesis protein PqqF" amino acids 13 to 714 (702 residues), 761.4 bits, see alignment E=6e-233 PF00675: Peptidase_M16" amino acids 19 to 142 (124 residues), 90 bits, see alignment E=1.5e-29 PF05193: Peptidase_M16_C" amino acids 181 to 317 (137 residues), 45.9 bits, see alignment E=6.4e-16 amino acids 633 to 734 (102 residues), 26.2 bits, see alignment E=7e-10

Best Hits

Predicted SEED Role

"Coenzyme PQQ synthesis protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (813 amino acids)

>PFR28_04085 hypothetical protein (Pseudomonas sp. RS175)
MPAPDSLRPFTQTLANGLRVTLRHAPDLKRSAAVLRVAVGSHDAPLAWPGMAHFLEHLFF
LGTARFPPEQNLMAYVQRHGGQVNARTSERTTDFFFELPPAVFAGGLERLSDMLADPRLA
ETDQLREREVLHAEFVAWSQDAAAQRQVALLEGLSAAHPLRGFHAGNRDSLGVSRPEFQK
ALRDFYRTFYQRGQMTLSLTGPQSLEALRKLAEEFAHDLPAGEAVARPLPTALMTASVPC
YRIADKDRLDLLFAFEQLPVASPQALAFLCMWLNAGKPRGLLATLRRLGLADTLKATPLY
EYAGQALLHIEFKRVQGRAHNDIQRLLHDWLGFFARQDDWQPLRKEFEALLRRGQETASA
LQLAHLDNEGRQAPLSENDLHRLREILKQAQPADPVVEEWQLPAPNPFLQSPVEPPRAGL
IRGQTSAHRGLRTFAQDRSRGRRERSPMQFSQALADSAREGALYLRWQLMTQAPQDLQSR
LERHLRDVCGEAGQAGVDVTFEASGDRCLLKLLGVQAAMPPVLEHILARLEQPLPASEPG
SDAPLMPVRHLLKELSNRSQRKSPSTSVAASDDYRSLWTTAQWDGLAVGLSAATQGAMGT
ALARVPGAPGHPVEPMVSSAQWTWDRLATPQSEEQAVLLFCPTPTRDLFDEACWRLLAQL
CQTPFYQRLRVDLQLGYAVFSGLKQINGQTGLLFGVQSPSVSAAQLAAHVEQFLGELPDL
IHQLDDSTLHTQQQALAAQFQGDALPFAQAADLLWQGKLAGRPSNYLRQLVEALCLLDRK
QLLDAARRLAAADGGRLCLSNGTCPDTRWKTAQ