Protein Info for PFR28_03956 in Pseudomonas sp. RS175

Annotation: putative ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00005: ABC_tran" amino acids 27 to 180 (154 residues), 104 bits, see alignment E=1e-33

Best Hits

Swiss-Prot: 37% identical to LOLD_NITHX: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)

KEGG orthology group: K02003, (no description) (inferred from 93% identity to pba:PSEBR_a5047)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>PFR28_03956 putative ABC transporter ATP-binding protein (Pseudomonas sp. RS175)
MTQALIELSDLVFSWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGAVQTPDR
GSIRLLGQELSTLSAASRDRFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSRLRAQRAV
QRHGSVGQAAATLLTHLGLADPDLLGRRADSLSIGQQQRVAAARALIGQPELVIADEPTS
ALDHDARENFLRLLFAECREAGSSLLFVSHDRSLAPLFDRNLSLADLNRAAKPLEV