Protein Info for PFR28_03779 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 812 PF20437: LonC_helical" amino acids 92 to 123 (32 residues), 49.5 bits, see alignment (E = 6.9e-17) PF13654: AAA_32" amino acids 317 to 448 (132 residues), 173 bits, see alignment E=6.1e-55 PF20436: LonB_AAA-LID" amino acids 476 to 540 (65 residues), 71.7 bits, see alignment E=8.2e-24 PF05362: Lon_C" amino acids 650 to 753 (104 residues), 28.1 bits, see alignment E=2.9e-10

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a4872)

Predicted SEED Role

"ATP-dependent protease La (EC 3.4.21.53) Type II" in subsystem Proteasome bacterial or Proteolysis in bacteria, ATP-dependent (EC 3.4.21.53)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.53

Use Curated BLAST to search for 3.4.21.53

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (812 amino acids)

>PFR28_03779 hypothetical protein (Pseudomonas sp. RS175)
MPDPVAASLRLAPEALTRPFSAEQFSFSTTNDLEPFRGVLGQERAVEALQFGVAMPRPGY
NVFVMGEPGTGRFSFVKRYLKAEGKRMQTPADWVYVNNFDEPREPRALELPSGTAGAFIA
DINGLIDNLLATFPAVFEHPSYQQKKSAIDRAFNQRYDRALDVIERLALEKDVALYRDSS
NIAFTPMSEGKALDEAEFAQLPEAERERFHEDISSLEERLNEELASLPQWKRESNNQLRQ
LNEETITLALQPLLAPLSEKYAENAAVCGYLQAMQVNLLRTVVEQLVDDSKTDAIARKLL
EEQYAPSLVVGHPASGGAPVVFEPHPTYDNLFGRIEYSTDQGALYTTYRQLRPGALHRAN
GGFLILEAEKMLGEPFVWDALKRALQSRKLKMESPLGELGRVATVSLTPQHIPLQVKVVI
IGARQLYYALQDLDSDFQEMFRVLVDFDEDIPMGDESLEQFAQLLKTRTSEEGMAPLTAD
AVARLATYSARLAEHQGRLSARIGDLFQLVSEADFIRQLAGDEMTDAGHIERALKAKATR
TGRVSARILDDMLAGIILIDTDGAAVGKCNGLTVLEVGDSAFGVPARISATVYPGGSGIV
DIEREVNLGQPIHSKGVMILTGYLGSRYAQEFPLAISASIALEQSYGYVDGDSASLGEAC
TLISALSKTPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGAIIPQA
NVATLMLDEKVLAAVRAGQFHVYAVRQADEALSLLVGEPAGEPDENGEFPEGSVNARVVE
RLRVIAEMVSEEDIKEAEKEQAQQALAETKPA