Protein Info for PFR28_03686 in Pseudomonas sp. RS175

Annotation: Intermembrane transport protein YebT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 767 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF02470: MlaD" amino acids 41 to 134 (94 residues), 56.5 bits, see alignment E=1.3e-19 amino acids 157 to 226 (70 residues), 47.9 bits, see alignment E=6.5e-17 amino acids 280 to 371 (92 residues), 52.2 bits, see alignment E=3.1e-18 amino acids 396 to 456 (61 residues), 36.9 bits, see alignment 1.8e-13 amino acids 519 to 608 (90 residues), 45.5 bits, see alignment E=3.6e-16 amino acids 636 to 694 (59 residues), 34 bits, see alignment 1.4e-12

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a4786)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (767 amino acids)

>PFR28_03686 Intermembrane transport protein YebT (Pseudomonas sp. RS175)
MTDLPTAKTRPASNWSAIWILPLIALIIGGWLGWKAYNETGIQISVRFESGEGIQVNKTE
VVYKGMPVGKVTALTLDDEGSSKGVVATIEMNKDVEQYLKTGTRFWLVKPSVSLAGITGL
ETLVSGNYVAISPGEGESSRKFKALAQEPPLSDAKPGLHLTLKADRLGSLNRGSPVFYKQ
IQVGQVKSYQLSEDQNTVEIKVFIEPTYASLVRKHTRFWNASGISIDANLSGVKVRSESL
ASIVAGGIAFATPESRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQSGRTPV
MYKGIQVGSLKNLKVDPDLSSATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEAL
VKGNYIAIRPGDKGGAPQREFEARAKAPPLDLRAPGLHLVLLTENLGSLEVGSPILYKQV
KVGSVQSYQFSRKKKQLIIGVHIEKEYEGLVNGSTRFWNASGITLTGGLTGGIQVKSESL
QSLMAGGIAFETPEPNVPLKRRVPRFRLHENREAAQQSGTVVTIKVDRADGLRSGTPIRF
KGLDVGKVEDVDLSADMQSVLLTARITEVPERIARVGSQFWVVKPELGLIKTSNLETLVT
GQYLEVQPAVKNLGPQKNFVALANPPENAVPEAGLSLVLSAARRGSLKIGVPVTYREVTV
GKVTGYELGQTADRVLIHILIEPKYAPLVRSGTRFWNTSGFGLDFGLFKGATVRTESLET
LIQGGIAFATPDGEKMGGPARAEQTFPLFDKFEDEWLTWAPKIKLGK