Protein Info for PFR28_03623 in Pseudomonas sp. RS175

Annotation: Ribosomal RNA small subunit methyltransferase C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF08468: MTS_N
  • amino acids 5 to 153 (149 residues), 152.2 bits, E=3e-48
• PF05175: MTS
  • amino acids 162 to 328 (167 residues), 189.1 bits, E=1.2e-59
• PF13649: Methyltransf_25
  • amino acids 196 to 292 (97 residues), 33.6 bits, E=1.3e-11

Best Hits

Swiss-Prot: 95% identical to RSMC_PSEPF: Ribosomal RNA small subunit methyltransferase C (rsmC) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K00564, ribosomal RNA small subunit methyltransferase C [EC: 2.1.1.172] (inferred from 96% identity to pba:PSEBR_a865)

Predicted SEED Role

"Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)" (EC 2.1.1.52)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.172

Use Curated BLAST to search for 2.1.1.172 or 2.1.1.52

Protein Sequence (332 amino acids)

>PFR28_03623 Ribosomal RNA small subunit methyltransferase C (Pseudomonas sp. RS175)
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPGAHGWCWHAGDQAALDARFPERSHFG
VNVPERAFDTAVVFLPKAKDLTDYLLNAVAARLAGREVYLVGEKRAGIESASKQLNPFGK
PRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEGPLKIVSLPGVFSHGRLDRGS
ALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNSVTLLDVDAFATASSRLTLAANGL
EAEVLTADGIDAAPMGLNAILSNPPFHVGVHTDYQATENLLRKAAKHLKNGGELRLVANS
FLKYQPLIEEHLGVCTIKAEGQGFRIYRAKRG