Protein Info for PFR28_03619 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 619 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF06980: DUF1302" amino acids 13 to 619 (607 residues), 598.9 bits, see alignment E=6.2e-184

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a869)

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (619 amino acids)

>PFR28_03619 hypothetical protein (Pseudomonas sp. RS175)
MTTATTFWRRAKLPLAVSLASSLAGPAFGVSFNIGEIEGQFDSSLSVGASWSTAKPNSDL
IGVNNGGKGLSQTSDDGHLNFKRGETFSKIFKGIHDLELKYGDTGVFVRGKYWYDFELKD
ENRLYKDISDSNRKEGAKSSGGQILDAFVYHNYAIADQPGSVRLGKQVVSWGESTFIQGG
INSINPIDVSAFRRPGAEIKEGLIPVNMFYVSQSLTDNLSAEAFYQIEWDQTVVDNCGTF
FSQPDVIADGCNDNLRVLNKRSSIPFPGIVLPILEGQGVDINEEGVLVRRGPDRDARDSG
QWGASLKYMFEPLDTEFGAYFMNYHSRAPIFSATGAPQSVYNSAPLFGQLAPLIVAGNSN
YFVEYPEDIRLYGLSFSTTLPTGTAWSGELSYRPNAPVQLSTTDILFAGVTPLPGLGNAS
VLQGTPGQDLHGYRRKEITQFQTTFTHFLDQVMGASRLTLVGEVGVTHVGGLESKSDARY
GRDPVFGPGQLPNGFCSTLNSSTAAGGGQTAANVNSNCNNDGFTTSTSWGYRARAIWEYP
DVFAGVNLKPNVAWSHDVKGYSPGPGGNFEEGRKAVSLGLDAEYQNTYNASLAYTNFFGG
DFSTVDDRDFLALSVGVTF