Protein Info for PFR28_03497 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 840 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF16967: TcfC" amino acids 272 to 337 (66 residues), 78 bits, see alignment 3.1e-26 PF15976: CooC_C" amino acids 730 to 825 (96 residues), 78.3 bits, see alignment E=3.9e-26

Best Hits

KEGG orthology group: None (inferred from 86% identity to pba:PSEBR_a4525)

Predicted SEED Role

"CFA/I fimbrial subunit C precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (840 amino acids)

>PFR28_03497 hypothetical protein (Pseudomonas sp. RS175)
MFPKTPIAGALALMLCASALAAPAAPGTTPRSLLSQAKGLPEEFETHFFDVPLAVRIELD
QQYLGEAMVVLTRDDRITLLEFTDTQDSPISAADRGQWEHLLKAGRPLGACEAQCTSGLL
AVHYSLEHSLVSILTQSVERGTAQKRYHDLPQDGSLGLIFNNQLNLNGGQEQDTGGRYGL
NASSSLGNWSQSFDLQLSRLGGPDDKLYHAVHELFTQREMEDTFFRLGYFMPGSDGLNRQ
IRSFGANPDTALGVMYGSSDSLLINNPKPSVYPIYVTASRQAAVEIYRNGLLINTQAVSA
GLQSLDTRPLPGGIYEVEVRLIEDGQTTATTQELVYKPNNWRSADDRWRYNLFAGRESRL
LSNWDDQPSGFTTAGFGLNYLAHPRVVLGLSTRQVQDKLQYGTSVDWTLASSASLFANVY
QTEKYGTGMDLQGLYSYGLGSVVASHNRSWLDTRNTYETLPDGTRVRQRNVFVGHTSNSS
LSINHRLSNKASVNGRLFYSEGNVQGTGLDLGWNQRGKLGGSDANWRLSVFDRPGTSSTA
ERRNRGLDLSVNVALGGPGEYWTGSIGTRTSRDGDRDNNASLTYRRDLEDHVLQSVSATA
LADTYGMGLSGLASFETDGLYGDGFIQRSSYNDNLTSGLNLSSTVAVGGGKVAFSGLPQS
GGAGMIVDVETDLDNIVLLADDLTGGTTTLRPGRNFVATSAYQNSMVTFDFDGIHPPAAS
ISPARTRYHLNKGGVDYRKVSVIRTVTVLGRLLDEQGKPLKGHHVINHASRGVSEVDGFF
SMEMNASSPTLEVRYGNDLLCQFRLDPDSASREGDVLMIGDLRCTPDTLAGNDPVRQTAG