Protein Info for PFR28_03493 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 36 to 54 (19 residues), see Phobius details PF00912: Transgly" amino acids 156 to 352 (197 residues), 66.8 bits, see alignment E=1.7e-22 PF00905: Transpeptidase" amino acids 846 to 949 (104 residues), 22.7 bits, see alignment E=5.1e-09

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a4519)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>PFR28_03493 hypothetical protein (Pseudomonas sp. RS175)
MGALWQTDSSKPVVPTERMEEAPLPQEKRRVRHGWRAFWLLLLIIVVVVGLAAAKEMRTS
RFQASELSRYAGSLSYSVQPGPSDAIVYPGDGPFDRRLGYSALGEFLPRLLKRNYVIQAQ
ARFSPALMDYVDKGLFVPYPEKIQAGLTITDCRAAPLYQFKYPQQLYASFDAIPPVVVQS
LLFIENRFLLDPRYPEANPAVDWPRFGMAAWSQVAKLLSLPGQSAGGSTLATQLEKYRHS
PDGLTVSGAEKIRQMISASVRAYQSGPQTLEARQRIIRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGADFKRANERLFSDATDPRSLAEKGLALREMLSLMIAQRRPSHYLSKGRDELTR
LTDSHLRLLAQNGVIDAALAEAALASKVSYRDWVQDPTIQPIESNKGISAARSRLATLLN
RPLYDLDRLDLSATSTLQSDLQAQATDYLKRLADPAFAAEIGLMGERLLTPTSTTQVRYS
FTLLELTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKLRVLTTYLQIIAELHERYAGQ
SPAQLKKTEIAEQDRLSRWAVDYLIQNSDRNLPKMLEAALDRTYSASPGEAFFTGGGLHT
FHNFRSEDNGRNPTLRDSLRESINLPFIRLMRDLVRYATYAGPSNSAELLKDDRDPRRQE
YLAQFADREGTSFLLKFWKKYQKKDTSQRLETFLDSMHPTAIRLAAVHRYFFPNDSQESF
NRFVRSHLKSAKSAEKLTDERLERLYQSYGPGAYDLPDQGFIAKVHPLDLWLMGYLLNNP
DAKFSQIVKASEFERQEVYSWLFKSRHKSARDSRIRTMLEIEAFLDIHQRWQKVGYPFDH
LVPSLATAIGSSGDRPAALAELVGTILNDGVRLPALRVDSLHFAANTPYETQLVNDPDNG
KQVMPVEVARALRGALSQVVDAGTAKRVAGSFKLADGTPLQMGGKTGTGDNRIEAVGAGG
RVISSKSINRTATFVFYIGDSHFGTLTAYVPGASAQNFKFTSALPVQVLKGMAPILSPYL
QPGTHTQCQPLVARR