Protein Info for PFR28_03286 in Pseudomonas sp. RS175

Annotation: Octopine transport system permease protein OccM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 16 to 43 (28 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 12 to 117 (106 residues), 76.6 bits, see alignment E=9.2e-26 PF00528: BPD_transp_1" amino acids 31 to 223 (193 residues), 67.5 bits, see alignment E=6.6e-23

Best Hits

Swiss-Prot: 49% identical to OCCM_RHIRD: Octopine transport system permease protein OccM (occM) from Rhizobium radiobacter

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a4322)

Predicted SEED Role

"Arginine/ornithine ABC transporter, permease protein AotM" in subsystem Arginine and Ornithine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (232 amino acids)

>PFR28_03286 Octopine transport system permease protein OccM (Pseudomonas sp. RS175)
MIFDYNVIFDALPLYFSGLLTTLKLLALSLFFGLLAALPLGLMRVSKQPIVNMTAWLYTY
VIRGTPMLVQLFLIYYGLAQFEIVRESFLWPWLSSATFCACLAFAINTSAYTAEIIAGSL
RATPNGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDI
TGAARTVNAQYYLPFEAYITAGAFYLCLTFILVRLFKLAERRWLSYLAPRKH