Protein Info for PFR28_03261 in Pseudomonas sp. RS175

Annotation: putative MFS-type transporter YcaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 324 to 348 (25 residues), see Phobius details amino acids 354 to 371 (18 residues), see Phobius details PF07690: MFS_1" amino acids 11 to 283 (273 residues), 80.4 bits, see alignment E=1.2e-26 amino acids 289 to 373 (85 residues), 41.1 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a4294)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>PFR28_03261 putative MFS-type transporter YcaD (Pseudomonas sp. RS175)
MRQIWKPFRALYFASLMMLIGSGLLSTYLALRLAADNVDSLWVGALMAANYFGLVLGGKI
GHRLIARVGHIRAYSACAGLVGAAVLGHGLVDWLPAWIVLRMIVGLGMMCQYMVIESWLN
EQAEASQRGVVFSGYMIASYLGLVLGQLILVMHPALGPELLMLVALCFALCLVPVALTRR
IHPAPMRPAPMEPRFFIKRVPQSLSTVLGSGLIAGSFYGLAPLYASQQGLSTEQVGLFMG
SCIFAGLLVQWPLGWLSDRYDRALLIRCFALVLAICALPLAILPKVPLEMLFVAGFLCSL
VQFCLYPLAVAFSNDHVEGDRRVSLTAMLLVTYGVGASIGPLVAGVLMKTFGSHMLYGFF
AFFALILVWRIRPKAVTNLHQVDDAPLHHVAMPDSMSSSPLVACLDPRVDEQVVQEQMQT
PATEQEPAAEASVEEPVK