Protein Info for PFR28_03252 in Pseudomonas sp. RS175

Annotation: Basal-body rod modification protein FlgD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF03963: FlgD" amino acids 20 to 90 (71 residues), 83.8 bits, see alignment E=1.2e-27 PF13861: FLgD_tudor" amino acids 100 to 236 (137 residues), 65 bits, see alignment E=8.8e-22 PF13860: FlgD_ig" amino acids 122 to 193 (72 residues), 72.2 bits, see alignment E=4.5e-24

Best Hits

KEGG orthology group: K02389, flagellar basal-body rod modification protein FlgD (inferred from 93% identity to pba:PSEBR_a4285)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>PFR28_03252 Basal-body rod modification protein FlgD (Pseudomonas sp. RS175)
MSVTNTTSGLSLNEILANSSVKTNNTSDGLGGATQAATGNKELGKDAFLQLLVTQLKNQN
PLEPQDNGEFVAQLAQFSSLEGITTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDKA
VVDTSKSLNGTVVVPAAVSSLTVKIMDKDGKTVRTIDLGSQKAGNSAFIWDGKNDAGTTV
ESGTYTFAASTTIDGKATSLITNLPATVSSVTISQTGGELMLNLAGLGSIALSKVQTIGM