Protein Info for PFR28_03240 in Pseudomonas sp. RS175

Annotation: IS110 family transposase ISPfl1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF01548: DEDD_Tnp_IS110" amino acids 9 to 146 (138 residues), 63.1 bits, see alignment E=2.8e-21 PF02371: Transposase_20" amino acids 212 to 288 (77 residues), 81.9 bits, see alignment E=3.4e-27

Best Hits

Swiss-Prot: 55% identical to TRA8_YEREN: Transposase for insertion sequence element IS1328 from Yersinia enterocolitica

KEGG orthology group: None (inferred from 64% identity to pfo:Pfl01_3816)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>PFR28_03240 IS110 family transposase ISPfl1 (Pseudomonas sp. RS175)
MNTMTLLDIDIGKHSFHLHGQDAKGHQVLRKKTSRSQLLGTLAQLPACTVVMESCGGAHW
LARQVEALGHEVKLIAPQYVKPFVKGNKNDFIDAEAICEAASRPAMRFCSIKTAEQQTLS
ALHRVRDSLIGHRTVATNQIHGFLLEFGISLPIGATALNRVPALLDDPQHPVPLRLKSVV
MRLHRQIQQMNDEIKDIESDLKQQLKEDDAGNRLQSIPGIGPITASAVLADVGDASNYRS
GRDFAASLGLVPRQYSTGGKTVLLGISKRGDKHIRQLLVQDARSVIQHIDKREDALGPWV
RELLTRRHSNVVACALANKLARIVWAVLAKGGQYDPHPNA