Protein Info for PFR28_03194 in Pseudomonas sp. RS175

Annotation: Long-chain fatty acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03349: Toluene_X" amino acids 15 to 427 (413 residues), 422.7 bits, see alignment E=1.3e-130 PF02530: Porin_2" amino acids 274 to 418 (145 residues), 24 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: K06076, long-chain fatty acid transport protein (inferred from 89% identity to pba:PSEBR_a4232)

Predicted SEED Role

"Long-chain fatty acid transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>PFR28_03194 Long-chain fatty acid transport protein (Pseudomonas sp. RS175)
MKKMMLKTTLGLAVTLASSQLFASGFALNEQSISGMGTGFAGRSSSADDASTVFGNPAGM
SRLKRQQVTGGFAAIDASTDINDASGSQSGTNKGDMVPLTGVPMGYYVKPIDDQWAFGLG
VYAPFGLITDYESSFQGRNFGSKSEVKVVTFQPTVSYAFNDKVSIGFGPTINRISGSLES
ALTLPAPLPGTDGNVKIKGDDIGYGYNIGLLVQATDTTRVGLTYHSKVKYKLDGHTEVSP
GAGVPAGFLSGARYDASLDITTPESVDFSVTQEINDAWTVYAGSTWTRWSRLKDITVENK
GTETGGGLLNPVLGTITEEQNWHDTWAYAIGTSYRLNKQWVLRTGLTFDQSPANNTDRSP
RIPTGDRTIFSLGAGWSPTEDLTIDVAYSYLKEEKVNVNQTNALGQSYNAEYENSANGFG
VGATYRF