Protein Info for PFR28_03132 in Pseudomonas sp. RS175

Annotation: putative DNA endonuclease SmrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 PF01713: Smr" amino acids 95 to 176 (82 residues), 86.8 bits, see alignment E=4.5e-29

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a4177)

Predicted SEED Role

"Smr domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>PFR28_03132 putative DNA endonuclease SmrA (Pseudomonas sp. RS175)
MQDDDFSLFKSAIQGVKPIKHDRAETGKPKTDRAQIAKLRQAATVRADATTVDGLSDQFV
IDVGPEDELMWARDGVQESQMRKLKAGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFE
IRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHPQVLGFTSCQAKHGGAGAVYVMLKRTMM
EGRDE