Protein Info for PFR28_02958 in Pseudomonas sp. RS175

Annotation: 1-acyl-sn-glycerol-3-phosphate acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 56 (16 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details TIGR00530: 1-acylglycerol-3-phosphate O-acyltransferases" amino acids 62 to 181 (120 residues), 144.4 bits, see alignment E=8.1e-47 PF01553: Acyltransferase" amino acids 65 to 181 (117 residues), 121.9 bits, see alignment E=8.2e-40

Best Hits

KEGG orthology group: K00655, 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC: 2.3.1.51] (inferred from 86% identity to pba:PSEBR_a4002)

Predicted SEED Role

"1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Phosphate metabolism (EC 2.3.1.51)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.51

Use Curated BLAST to search for 2.3.1.51

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>PFR28_02958 1-acyl-sn-glycerol-3-phosphate acyltransferase (Pseudomonas sp. RS175)
MLFVLRMLLLGLHFILAGVLGLILGVCRPFNPDNSRLCARLYAWPAMWILGLRLKAGVDT
LANKPRSCVIIANHQSNYDLFVFGSVVPRRTVCIGKKSLKWVPLFGQLFWLAGNVLIDRG
NAIKARRAMLTTTHTLQHEDTSIWVFPEGTRNLGHELLPFKKGAFQMAIAAGVPIVPVCV
SNYVNHMRLNRWRSGDILIRSLPAIPTAGLSMEDMPRLMNQCREQMHECIESMDRQIRKS