Protein Info for PFR28_02826 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1092 TIGR00229: PAS domain S-box protein" amino acids 44 to 153 (110 residues), 28.8 bits, see alignment E=1.2e-10 amino acids 154 to 278 (125 residues), 50.1 bits, see alignment E=2.9e-17 amino acids 280 to 407 (128 residues), 26.5 bits, see alignment E=6e-10 amino acids 409 to 532 (124 residues), 60.8 bits, see alignment E=1.4e-20 amino acids 533 to 656 (124 residues), 75.5 bits, see alignment E=4.1e-25 PF08447: PAS_3" amino acids 52 to 140 (89 residues), 47.9 bits, see alignment E=4.8e-16 amino acids 306 to 393 (88 residues), 41.4 bits, see alignment E=4.9e-14 PF00989: PAS" amino acids 159 to 246 (88 residues), 30.4 bits, see alignment E=1.2e-10 amino acids 413 to 457 (45 residues), 23.7 bits, see alignment (E = 1.5e-08) amino acids 538 to 647 (110 residues), 32.6 bits, see alignment E=2.4e-11 PF08448: PAS_4" amino acids 419 to 527 (109 residues), 24.9 bits, see alignment E=7e-09 amino acids 543 to 648 (106 residues), 24.2 bits, see alignment E=1.2e-08 PF13426: PAS_9" amino acids 422 to 524 (103 residues), 30.7 bits, see alignment E=1.1e-10 amino acids 547 to 648 (102 residues), 39.8 bits, see alignment E=1.7e-13 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 658 to 826 (169 residues), 157.1 bits, see alignment E=3.3e-50 PF00990: GGDEF" amino acids 661 to 822 (162 residues), 165.1 bits, see alignment E=4e-52 PF00563: EAL" amino acids 844 to 1081 (238 residues), 251.6 bits, see alignment E=2.5e-78

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3870)

Predicted SEED Role

"Sensory box/GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1092 amino acids)

>PFR28_02826 hypothetical protein (Pseudomonas sp. RS175)
MPNPADHIPPLPRIQALDPKRSEQSWDSAPQLLAALNGARLGAWSWDIDSGKISWSRGTQ
ALFGFDPRQPLPADVDYLDLLLPEDRAKAVRAFHAAVAGAPLEQAMHHRIVWPDGSLHWL
EISGSVLPDKHGRPRMIGVIREITHQREREQALRSSEKRFATLFHLCPNMVLLTRQEDGL
ISEANQYFESLFGWPVHDVIGRTTLELGLWVDPSQRARLVEATKAKGELVSMEVEFRASN
GQIHSGILSAQKVELEGQPYLLSTFLDTTERKLAEQALKDSQERLDLALDSAQLGTWDWH
IPSGMLYGSARAAQLHGLEPKPFHESFDAFFEGVPDEERNNMRNAYRSLREGPAGNYQLT
YRVQLPDGSSRYLESRARLYRNDDGSPLRMAGTLLDITDQVEREQSLAASEEKFATLFQV
SPDPICLTHQDSGRFLEINSSFTQTFGWTASDVIGRSADEIGLWDASGSSLQRIERVIRE
QSLSNVAIVVHHRSGHPLTCVISSRQINVDNQPCIVTTLRDITQQQRSEAALKASEEKFA
KAFHSSPDAITITERESGRYLEVNDGFCRLTGYRADEVLGHTVFEVGIWAEAKQRTALLA
ELQLKGRVHHQEMLGRNKRGELLTVEVSVEPITLNETDCLLLTARDVSLLRNAEAQIRHL
AYHDPLTNLPNRALLMDRLSQQIALLKRHDLRGALLFLDLDHFKHINDSLGHPVGDTVLK
IITARLEASVRQEDTVARLGGDEFVVLLSGLEGSRSEVTEQVQKLADTLRELLSEPMSLD
GQRLQVTPSIGMALIPDHGSTPADLLKRADIALYRAKDSGRNTSQMFHTTMQKAASERLR
METDLRQALARGEFSVHFQPQVDARDNRIIGAETLVRWHHPELGAQSPNEFIKVLEDSGL
ILEVGTWILDEACDGFKQLIAKGKIDPRRFSLCVNISPRQFRQSDFVERIESSLATHGLP
FTMLKLEITEGIVIQNLDDTIAKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKID
QSFVRDATSDPNDAEIIRAIVAMARSLNLEMIAEGVETLEQLQFLQGLDCHLYQGYLHSR
PLPLEAFERLLP