Protein Info for PFR28_02677 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 PF17481: Phage_sheath_domII" amino acids 101 to 198 (98 residues), 37 bits, see alignment E=5.8e-13 PF04984: Phage_sheath_1" amino acids 207 to 367 (161 residues), 67.9 bits, see alignment E=1.5e-22 PF17482: Phage_sheath_1C" amino acids 378 to 489 (112 residues), 54.4 bits, see alignment E=1.7e-18

Best Hits

Swiss-Prot: 41% identical to VPL_HAEIN: Mu-like prophage FluMu tail sheath protein (HI_1511) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 53% identity to dvu:DVU0210)

Predicted SEED Role

"Bacteriophage tail sheath protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>PFR28_02677 hypothetical protein (Pseudomonas sp. RS175)
MTIGMDTIPGAGTLRKPGVYSEIDNSKAVRGPQPVSYRRLLIGQKLAAGLAATDTLIRIT
SPAQADIQFGKGSMLAGMVRAVMAIDTYTELQVLPVADNAAGAAATATLAFTGPATASGT
IELMIAGRRISVGVISGDAATAIATAVVAAVTAADDMPVTATAATGTVTLTSRHKGEAGN
SLNARVNYYAGQVLPAGVAVTISAFTGGSGNPDLGNALAALGDEWFQVWGLPYSDAATLA
TVKTELNSRFAWDREIEAHAFTAARGTQGSLGTLGDSHNNQHLVIMMANDEPMPAYEKAA
ETMAIAALYAAIDPARPIQNLQYAWCLAPAAADKFTNQERNLLLFDGIATSKVNNDGSMV
VERLITTYKTNTAGGNDISYLDSETLFTLMFIRHDWRDYILRKYPRHKLADDGTRYGVGQ
PVVTPVVMKAEAIAKFREWERLGLVENMADFKANLIAERNESDPNRLDLLLPPDLVNQLR
IVANKIQFRL