Protein Info for PFR28_02518 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 101 to 129 (29 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details amino acids 206 to 234 (29 residues), see Phobius details amino acids 241 to 263 (23 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 375 to 401 (27 residues), see Phobius details amino acids 413 to 435 (23 residues), see Phobius details amino acids 441 to 466 (26 residues), see Phobius details amino acids 486 to 506 (21 residues), see Phobius details amino acids 546 to 565 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 87 to 262 (176 residues), 58.7 bits, see alignment E=3.3e-20 amino acids 393 to 560 (168 residues), 56.2 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 85% identity to pba:PSEBR_a3448)

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (579 amino acids)

>PFR28_02518 hypothetical protein (Pseudomonas sp. RS175)
MRPSIPTPAWLAFKYNQQVCWWADLALLGLLIALAVFIAYGLEQMDQPLGALDASPLSLD
LAHLPGYTLRTTLRMFIALLASFVFSLVIASLAAKSRKAALVILPALDILQSVPVLGFLT
FTVVFFMGVFPGKQSGVECAAIFAIFTSQVWNMTFSVYQSLRTMPHDFYEVSRQFGFSPW
QRFIRLELPFATPGLVWNMMMSMSGGWFFVVACEAITVGDTTVSLPGIGSWLALAIEQKN
VAATVWAVLAMVAVIMLYDLLFFRPVVAWADKFRFEQTAAQKRPRSRIYDLLRSTRLVPL
TLTALGSIKAALYLPRLPRLPPFRFKASEGFNRVADRAWIALVALACLAGLLQLAGFIAS
TLGQEDVIEAFGLGLVTLLRVAVLIVLASLVWVPIGVWIGLHPRWAERLQPVAQLLAAFP
ANVLFPFAVIAIVTLKLDPDIWLSPLMVLGTQWYILFNVIAGASALPNDLREAARNFRVG
GWQWWRVVALPGIFPYYVTGALTAAGGSWNASIVAEAVSWGDEHLYARGLGAFIAQATTA
GDLPRVALGVTVMSVFVVGFNRLLWRPLYGFAERRLRID