Protein Info for PFR28_02470 in Pseudomonas sp. RS175

Annotation: Carbohydrate diacid regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF05651: Diacid_rec" amino acids 4 to 134 (131 residues), 159.4 bits, see alignment E=7.9e-51 PF17853: GGDEF_2" amino acids 142 to 249 (108 residues), 32.7 bits, see alignment E=1.6e-11 PF13556: HTH_30" amino acids 307 to 364 (58 residues), 66.3 bits, see alignment E=3.4e-22

Best Hits

KEGG orthology group: K02647, carbohydrate diacid regulator (inferred from 95% identity to pba:PSEBR_a3402)

Predicted SEED Role

"Sugar diacid utilization regulator SdaR" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>PFR28_02470 Carbohydrate diacid regulator (Pseudomonas sp. RS175)
MFELDHDLAQDIVDRAMAILPYNVNVMDNQGLILGSGERERINTRHEGAQLVLANGRVVE
IDAHTAVHLKGVQPGINLPLMLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLLGQRNQQ
AEQQWRRQRCDDLLALLLGDSGDSPRLLDEAQQMGLKPQLSRVPYLFELGLEHGPGQTVE
ALSAWLMSRYPDSWCLTSSKSSLLWCRPVSASVENERLLAKLDGLGWNILRVAVGGQAEG
LAGLRRCYRRVGDLLAYGRDVLPQHRLLVLNRHRLPVMLWRHRSDDALDELLTPLRKVMA
RDSNGQLLATLRSWCEHDGQSQACADALGIHRNSLRYRMERIAELSGVDPLRLDGMLALY
LGVQLLPQSDLPPA