Protein Info for PFR28_02434 in Pseudomonas sp. RS175

Annotation: HTH-type transcriptional regulator MalT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 TIGR00229: PAS domain S-box protein" amino acids 140 to 262 (123 residues), 40.1 bits, see alignment E=1.8e-14 amino acids 263 to 385 (123 residues), 62.7 bits, see alignment E=1.9e-21 PF13426: PAS_9" amino acids 157 to 243 (87 residues), 29.1 bits, see alignment E=2.9e-10 amino acids 277 to 377 (101 residues), 33.5 bits, see alignment E=1.3e-11 PF00989: PAS" amino acids 275 to 371 (97 residues), 23.2 bits, see alignment E=1.7e-08 PF00196: GerE" amino acids 425 to 479 (55 residues), 64.5 bits, see alignment 1.6e-21

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a3364)

Predicted SEED Role

"Sensory box transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (494 amino acids)

>PFR28_02434 HTH-type transcriptional regulator MalT (Pseudomonas sp. RS175)
MNQDVPNADTNRRQLLQIIAGLSDGVMLIEVDQTIAWANEAALTMHGVSDLNDLGGNAKG
YAQRFNLRYRNNHALPEDNYPIARVARGDEFSDVLVEVTPKADPDRTWVHRIRSMVLTDR
GGEPEYLVLILSDATEWASAEQRFEKTFAANPAPAVICRLSDLRYIKVNPGFLEMTGYSR
DQVIGRSVYELDVLEAAEKRDLAVERLGQGATIPQMQAELRLPDGGSKQVIVAGQPLDLQ
DEDCMLFSFMDMEPRRKAETALRQSEERFAKSFRLSPVPTLVCSAEQQLLEINEAFLETT
GYASEELLGKTVEEIGFIDSEASAALFAKLEKAATVSRIDVKVQKKGGELIDCEVAADTV
LIQDKPCYLLVLMNITERKRSELELVAAIEEVMKDASWFSRTLIEKLANVKSINAPVPSV
SFTELTARERDVLGLICQGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWAR
ERGLFANEWRMKAP