Protein Info for PFR28_02408 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 55 to 77 (23 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details PF13160: DUF3995" amino acids 14 to 137 (124 residues), 103.5 bits, see alignment E=5.7e-34

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a3339)

Predicted SEED Role

"FIG00966599: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>PFR28_02408 hypothetical protein (Pseudomonas sp. RS175)
MTLLLARSLVAVFAAISLIHMYWALGGRWAALAVVPQVPVQHGQALRPAFDPSGWLTLLV
ALGLLLIALLVSLRVGLLAPPVTHRALQWLISAIALLMFARAIGESNLVGFFKEVKDSTF
ARLDTWIYSPLCVVLGAGLLTVAWA