Protein Info for PFR28_02380 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1274 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details PF14331: IcmF-related_N" amino acids 114 to 350 (237 residues), 146.2 bits, see alignment E=5.8e-47

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 88% identity to pba:PSEBR_a3312)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1274 amino acids)

>PFR28_02380 hypothetical protein (Pseudomonas sp. RS175)
MSPLSIVALVLLAIVLVVLVAALVWWLRTQGGAAIRSFYGSVRHMEQEQGTRDRYQMPWL
MMLGNETDAARLCSQWRLQPTDRVAWFGRWWSDAEGAVLVVPQALFLPDEGMNRQRGNWW
RLLGLILRLRSRRPLDAVIWTVPFDKLDDIEHTTELSLKVRRGFIDLLQRFGLSLPVYVV
ITGMEEMPGFQELVSALPGDARESIVGWSSPYSPEAAWQSHWSDQALDQVHAALSQSIIE
IGALSGQLSGDLYALPERFEGLRRALQVLLEPVFQGNVQGEAPRFRGVYFTASQAPAAIG
DGFPADDKVLRQTVFARQLWTRRLVAERGLAQPVPRLLRLRQRWHRLAGAVALVVGLVWL
GGMLWVWHDSVEQAEGLSQLVLRAHKNHMVVDPDEPQLEPTRFNVLNYWNVLETAPRWRF
VSVVFPTSWFSSVDTQLEQGLRQTARHHWILPLRDLLVSDLEKLKSIRNTERRGNVQSDD
PAQWQSYVKARDLVERAVRLEQHNQLFNQVISNPKAPLDELVQLSNNALSLNLNPGTLGR
ARFYNRVLFDAQNSDLKGLDLNAARPVVSDNFTGLMQRWLDHYFLADNFVRQAGYLKLHL
QRLEAGGGNSLSELEDLMALIDDLQTLVSLTNAAWSRGKGQDLVPGYSQLMDKVSHSALL
GPQLEQDLQSQAAKLQQSFRDQWIVQSGSRDNLLVQQGSGLLVLQEHVTALDDAVQALFK
RDFVALALQKAPSVGTADGMGSGSDDFSVALNYFASYKSYANDELPRIPPAYRDALIQAA
EGAAARAMWLSLDESDEQWPGMGFNVQASQAVALQKAFMDVNRGDLAVRFQRLLNRRALA
QINSGLQEIDAQPLFSQRADIQRWDGSKNFGLQLYGASDPQGLKLSLNQQFDAMLQIAEQ
RMPALEWLIVQQDNLSASEHDQVSRFMAMNDELLKYKNQNPASSAAQLTQLVSRDFIEMD
TASCGQILQTTQLSGGRGDLARRAVALQQSALQRCLYLQQSQAAAAWNDVADYFNQYLAG
RFPFSQDARASDADPARVQRLLELIDTRLPLAQAGLALSQTPERLAAEDFLNRLKQAGTW
LGPLFVRDKSGILGVEMDVRWRTDRDEERGADQVIAWGLNTGNQQIGYPGEPQQNLRWMV
GQPVRLTLRWARNGYQRPANDPLQPNLVVRDLEAGWEYQGPWSLLRLMRAQVSAQRQPNV
DYTDFPLTLQLPVTAQLQTQARTTQQTLMFLRLSLMSQGSKLPLSIVPPPTRAPRSPFMA
TSSSPAVATREEGL