Protein Info for PFR28_02330 in Pseudomonas sp. RS175

Annotation: 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF08659: KR" amino acids 7 to 167 (161 residues), 43.6 bits, see alignment E=4.8e-15 PF00106: adh_short" amino acids 8 to 192 (185 residues), 149.6 bits, see alignment E=1.2e-47 PF13561: adh_short_C2" amino acids 12 to 198 (187 residues), 82.5 bits, see alignment E=5.6e-27

Best Hits

KEGG orthology group: None (inferred from 91% identity to pba:PSEBR_a2503)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>PFR28_02330 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase (Pseudomonas sp. RS175)
MRLCDARVVLTGASGGIGLAIAAALCASGARVLAVARHRETLQPLIARYPQHLFWVGADL
TYLADRRKVLACAEALGGINLLINAAGVNHFAMLEQLDDSEIGAMLTLNVTAPICLTKLL
LPLLKQADSAMVVNVGSTYGSIGYPGYASYCASKFALRGFSEALRRELADTRVGVLYVAP
RATRTAMNTPAADALNQALKANVDDPATVASAVIHAITGDRRELYLGWPERFFVGLNSLL
PNLVDRGLRKQLPLIRRLSHKPVNEHLKP