Protein Info for PFR28_02154 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF03797: Autotransporter" amino acids 105 to 281 (177 residues), 86.4 bits, see alignment E=1.4e-28 TIGR01414: outer membrane autotransporter barrel domain" amino acids 107 to 304 (198 residues), 73.5 bits, see alignment E=9.1e-25

Best Hits

KEGG orthology group: None (inferred from 80% identity to pba:PSEBR_a3014)

Predicted SEED Role

"outer membrane autotransporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>PFR28_02154 hypothetical protein (Pseudomonas sp. RS175)
MKTSHRPQEIATTFHTVSTSLLLCSSMEVLAWPVEQSAQAWYDRTQSGNPSPTLIGTDPV
SSKSPALFTLRNDNGHTQRMGLISEQHQVIGNVTGTLVTPALAGQGKDTLNLQGTNLGAY
WSLTGPAGWHVDLSASGGRVSGYSRNEQGQRQAAEGNAVTLSVEGGFPIGISENWVVEPQ
AQLINRRITLDAPNSGDGTGNELSTWSGRVGARLKGHYQVNGLGMEPYVRTNLWHTVQNA
DTLSLDKVDKISSSRKSSTVEVGLGLVARVTPVVSLYVSADYSSDVDDNDLDGIIASLGV
RMRW