Protein Info for PFR28_02096 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF00989: PAS" amino acids 15 to 134 (120 residues), 32.9 bits, see alignment E=8.4e-12 PF08448: PAS_4" amino acids 19 to 137 (119 residues), 40.2 bits, see alignment E=5.4e-14 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 151 to 315 (165 residues), 183 bits, see alignment E=1.9e-58 PF00990: GGDEF" amino acids 156 to 312 (157 residues), 157.7 bits, see alignment E=3.2e-50

Best Hits

KEGG orthology group: None (inferred from 84% identity to pba:PSEBR_a2380)

Predicted SEED Role

"diguanylate cyclase (GGDEF domain) with PAS/PAC sensor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>PFR28_02096 hypothetical protein (Pseudomonas sp. RS175)
MNNPVDLNEFHWLLAIVQSIDVGVVVLDRDYRVQVWNTFMENRSGIQPKDAHNQHFFSLF
PEVDRQWFSRKVESVAALGTPAFTVWEQRPYLVRFKSYQPITGQEEYMFQNTTLLPLRSP
DSKINHICLVIYDVTDVATNRHQLQAANAQLQKLSSTDRLTGLYNRGHWEESLKAAFARY
QRYGNTSSLVMFDIDHFKRINDTYGHPAGDKVIEQIAAMVREHVRDSDIAGRYGGEEFGV
VLSDTDKVGAGMFAERLRKAVEEMDVPYGEQVIRFTISLGVAELNQPLNSHADLIARADQ
ALYTSKKTGRNRVTVYE