Protein Info for PFR28_01835 in Pseudomonas sp. RS175

Annotation: Porin-like protein NicP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF03573: OprD" amino acids 37 to 433 (397 residues), 435.9 bits, see alignment E=7.8e-135

Best Hits

KEGG orthology group: None (inferred from 88% identity to pba:PSEBR_a3138)

Predicted SEED Role

"Phenylacetic acid-specific porin; hydroxycinnamate specific porine"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>PFR28_01835 Porin-like protein NicP (Pseudomonas sp. RS175)
MPNLARGACVAAPVTRFAHLLACFGLSLSSVTASAQGLIDDSHGTLTLRNYYMDRDYKDD
GAKTAAREWAQGVIMNVESGFTPGTVGFGLDARGLMGIKLDSSPDRSGTELLPVSSGDRR
APDEYSRLALTGKLRFGQTTVKTGDVSIFLPFAFASPSRLLPQTFRGTTLSSKDIDGLIL
NTGYIDRINRRDSTDYQAMSIASPNRRFNGAATSSHLVYAGGDYQVDKALSLRVYHAEVA
DLYRQETLALLHKLPLGDGVLTTDLRSFFSGEDGAAKAGKVDNRNVSALFGYRWGGHSVS
LGYMHASGDTATPYVSGTELMGLSEMTMSSDFLNARERTWQAIHDYDFAAVGVPGLRTRL
RYVRGDHIELAAYNAEDRKERELQMELGYVIQSGPLKNVGLLVRKSIYRNDFPAAAAFRD
ENQTRFLVTYSVPIW