Protein Info for PFR28_01677 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 TIGR02608: delta-60 repeat domain" amino acids 43 to 88 (46 residues), 35 bits, see alignment 4.9e-13 amino acids 172 to 221 (50 residues), 36.1 bits, see alignment 2.3e-13 amino acids 233 to 277 (45 residues), 27.3 bits, see alignment 1.3e-10 amino acids 342 to 386 (45 residues), 30.4 bits, see alignment 1.3e-11 amino acids 396 to 427 (32 residues), 26.8 bits, see alignment (E = 1.8e-10) PF17164: DUF5122" amino acids 50 to 81 (32 residues), 24.1 bits, see alignment (E = 1.7e-09) amino acids 178 to 213 (36 residues), 20.5 bits, see alignment 2.3e-08 amino acids 236 to 268 (33 residues), 18.8 bits, see alignment (E = 7.8e-08) amino acids 346 to 378 (33 residues), 19.1 bits, see alignment (E = 6.4e-08) amino acids 404 to 428 (25 residues), 17.6 bits, see alignment (E = 1.9e-07)

Best Hits

KEGG orthology group: None (inferred from 78% identity to pba:PSEBR_a3119)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>PFR28_01677 hypothetical protein (Pseudomonas sp. RS175)
MLNHFAPGLPKTVAHAGQLDSGFANGGKVSVQFRGSTSSLTTGMAVDRHGRILVAAKVET
AQGSRFGLARLNHDGSPDKGFGTLGCVIGAFEQGFEATAGKVIVLPDASILLSGLHYESA
DRTLPALALFDQQGRAVPGFGHAGRTIIRLCGNLSQGLRDPWLPPGVPGLEACDMRVQAD
GRILLLANHHFQLSDHVGILIRLLPDGSLDSTFNSGGFVMVRRLLKNTWLSCLALQADGN
ILAGGAIDLPQQGLMARYDPSGRLDDSFGDNGFLSITTQERSVMISQIVQHENGDLQAFG
SSRDPMQCLTLKVRPDGQADLQFNQGQCRLLQIGRSASQWTAAQLQSDGKLVTAGATIGG
IEADFVLARHLPDGCLDPFFGQGRGWTRTRLGYSLDTATSLALQADDKILVGGYSLHGNY
RAVVARYWA