Protein Info for PFR28_01625 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 PF04174: CP_ATPgrasp_1" amino acids 72 to 401 (330 residues), 514.8 bits, see alignment E=8.9e-159 PF14403: CP_ATPgrasp_2" amino acids 72 to 445 (374 residues), 557.4 bits, see alignment E=1.5e-171

Best Hits

Swiss-Prot: 50% identical to Y605_MYCLE: Uncharacterized protein ML0605 (ML0605) from Mycobacterium leprae (strain TN)

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2783)

Predicted SEED Role

"Protein containing domains DUF404, DUF407"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>PFR28_01625 hypothetical protein (Pseudomonas sp. RS175)
MPRAFFNEMYDAKGDCRPHYQAFARWLADTPTELLEQRRREADLLFHRAGITFTLYGDEQ
GTERLIPFDIIPRSIKASEWQTVERGCIQRVQALNMFLADIYHDQRILKEGIIPAEQVLA
NEGYQIAMQGLNLHRGIYAHIAGVDLVRDGDGSYYVLEDNLRTPSGVSYMLEDRKMMMRL
FPELFAAQRVAPIDHYPNLLLDTLKSSSPLDNPTAVVLTPGRFNSAYFEHAFLAREMGVE
LVEGADLFVRDDHVYMRTTAGPQQVDVIYRRLDDAFLDPLSFNPDSMLGVPGLIAVYRAG
NVVLANAVGTGVADDKSIYPYVDEMIRFYLTEEPILKNVPTWQCRKPQDLSHVLANLPDL
VVKETQGSGGYGMLVGPAATAAQIEDFRARLKARPQDYIAQPTLSLSTCPTFVENGIAPR
HIDLRPFVLSGKETRLVPGGLTRVALREGSLVVNSSQGGGTKDTWVVED