Protein Info for PFR28_01588 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1213 transmembrane" amino acids 1126 to 1144 (19 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 246 (241 residues), 85.5 bits, see alignment E=1.2e-27 PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 37.4 bits, see alignment 3.7e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 85% identity to pba:PSEBR_a3259)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1213 amino acids)

>PFR28_01588 hypothetical protein (Pseudomonas sp. RS175)
MKILAIRLKNLASLAGPFDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPR
LSHTGRDAKVPDADGEVATGDPRTLLRRGTGDGYAEVDFRGIDGRRYRARWEANRAREKA
GGKLQASRQSLRDLDNDQLLASQKGEYKTQLEAALGLNFEQFTRAVLLAQSEFSAFLKAD
DNERSELLEKLTDTALYTRLGRRAFDKAKQAKESHRQLQDQASGVTPLAPQARAELDERF
NLAQQKLRLQQAQLKQLEQQHTWLKDLHQLQDEHASAAEQLQQAQAEWTALADERLKLTR
LEHLAPQRHQFVRQAELTRQLAPLATQIQRLSERQIELNEQRAELEKGLEAAQLALVAAR
QQSTDNTLSLRQAFDEQSTLARLATEVNQAAERQQHAQQACIEGQRTIETLQQQQRQVAE
RLQRIAIELEQSGHLAPLSDAWNAYRDRLQQLMLIGNRLNQGQAELATLEHSAARAAEDL
AARRQDLEVLYKEAGAEPEAVAEQIQLLGTLLQDNRKQQRAFEELTRLWALQQDLDKRAA
ELEQRQQQALQERDRLVREGSEAKAELGVAEQTLTVTRQLLERQRLARSESVEQLRAQLQ
DDQPCPVCGSVEHPYHQPEALLQSLGRHDESEEANARQAVERLNEKVIDLRTRYSGVIAQ
LKELRQQQEQLADQQQALNPTLQAHPLATQLSAQDAPRRDAWLAQQNSQLNLRITQDEER
QAALLTLQQDAARLAQHLRAAETASQQATQHLEHQRQELTRDRQRLDEELSHFSALLPAD
TLQALRTEPAATFMQLDQQIARRLEQLEQQRDELGEQLQRQQALEKEQDRQQTRAQQLEA
AQQQLQALTGQQQACQQALKQLLGEHASAEQWQQRLEQALEQARSAEAAASQQLHERRNE
LVQLAAELKARQEQTQALDAELQSLAAGIGQWRASHPELDDAALQALLELDEQHVGPLRQ
RLLHGEKAVEQARVRLAEREQRLHNHQAQHNGNPSPEALSDALAELQTQLAASEQQCAEL
RAEQAQDQRRQDANQAIALQIDQAYAEYQRWARLDALIGSATGDRFRKLAQAYNLDLLVH
HANVQLRQLARRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSTVEVK