Protein Info for PFR28_01489 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 TIGR02608: delta-60 repeat domain" amino acids 20 to 74 (55 residues), 44.5 bits, see alignment 5.3e-16 amino acids 143 to 180 (38 residues), 20.1 bits, see alignment 2.2e-08 amino acids 188 to 233 (46 residues), 34.9 bits, see alignment 5.1e-13 amino acids 241 to 286 (46 residues), 48 bits, see alignment 4.2e-17 amino acids 294 to 336 (43 residues), 52.8 bits, see alignment 1.4e-18 PF17164: DUF5122" amino acids 28 to 63 (36 residues), 21.7 bits, see alignment 2e-08 amino acids 245 to 276 (32 residues), 33.2 bits, see alignment (E = 5.3e-12) amino acids 301 to 333 (33 residues), 40.7 bits, see alignment (E = 2.4e-14) PF00353: HemolysinCabind" amino acids 353 to 387 (35 residues), 30.1 bits, see alignment 3.7e-11

Best Hits

KEGG orthology group: None (inferred from 74% identity to pba:PSEBR_a2917)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>PFR28_01489 hypothetical protein (Pseudomonas sp. RS175)
MATTYSAPGTMIVDIAGHADNAQDVVIQPDGSILIAGFSQYSDDLDEGMDFSLTRLLADG
SLDKDYGNAGRQVIHKQIPLEKTYTLQVQADGAVVTAHEGHDDTAIVQRWGPDGKADLTF
NSNAAASLPSGFGSAPLVQAKADGGVLVSALEGHTLKVAQLNADGTRDMAFGTQGTLTLQ
ADGTFEFMQGLTPMADGGLLVQGAPGFQNSLLKYTADGELDTDFGEGGIASLSFLGSYRG
DVAIQDDGKILVASTSTFKDYAVTRLNADGSLDLSFGNQGTVSVDLPGDSALASEITLLD
DGRILLAGHAYANHGSDFAAVRLNADGSLDTTFGSTDGTARLVGSSGEDKLQGLETDEIL
RGLAGDDLLQGNLGRDLLSGGAGSDVLRYASVADSFRCADSSGSDRLLDFNPDEDRIDLS
ALGFTGIGNGYDGTLAIRNNADDTRTYLKSFEANGDGQRFELVIDGNVSSRLNESNLLFS
AADNSAPASADTGAKSAEVPPPGHVELTLIGTGPNLHTDVV