Protein Info for PFR28_01474 in Pseudomonas sp. RS175

Annotation: putative oxidoreductase YgfF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF00106: adh_short" amino acids 10 to 202 (193 residues), 155.1 bits, see alignment E=2.4e-49 PF08659: KR" amino acids 10 to 173 (164 residues), 33.8 bits, see alignment E=4.9e-12 PF13561: adh_short_C2" amino acids 17 to 252 (236 residues), 182.1 bits, see alignment E=2.1e-57

Best Hits

Swiss-Prot: 57% identical to YGFF_ECOLI: Uncharacterized oxidoreductase YgfF (ygfF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 85% identity to bxe:Bxe_B2688)

MetaCyc: 38% identical to lyngbyatoxin A monooxygenase (Moorena producens)
1.14.13.-; 1.14.13.-

Predicted SEED Role

"FIG00553873: hypothetical protein"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>PFR28_01474 putative oxidoreductase YgfF (Pseudomonas sp. RS175)
MNNVSQAPLILITGGGRGVGAATARLAAARGYDVAISYVANQASALAVVADVQALGRRAL
AVRADSADPGQVADLFTAIDRSFGRLDVLVNNAGVLSVQSRLEDLGFERMQRIFAVNSIG
PMLCAQQAVKRMAYRHNGAGGVMINVSSASARLGSPNEYVDYAASKGALETFTIGLAKEV
AREGIRVNGIRPGHIYTEMHASGGEPGRVDRVKDTIPMGRGGQPEEVARAILWLASAEAS
FVTGTFLDVTGGK