Protein Info for PFR28_01400 in Pseudomonas sp. RS175

Annotation: putative ABC transporter ATP-binding protein YejF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 PF00005: ABC_tran" amino acids 28 to 186 (159 residues), 108 bits, see alignment E=2.8e-34 amino acids 302 to 452 (151 residues), 121.6 bits, see alignment E=1.8e-38 PF08352: oligo_HPY" amino acids 237 to 267 (31 residues), 18.5 bits, see alignment (E = 9.6e-07) amino acids 503 to 526 (24 residues), 21.7 bits, see alignment (E = 9.3e-08)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 92% identity to pba:PSEBR_a1974)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (530 amino acids)

>PFR28_01400 putative ABC transporter ATP-binding protein YejF (Pseudomonas sp. RS175)
MKRNSEMSDNLIEIRDLSVAFNDNTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQL
LPQTGTRTTGSIRYRGQELVGAEASTLRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETL
MLHKGLGGKAARQRILELLALVGIQNPLERLKAYPHQLSGGQRQRVMIAMALACEPELLI
ADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQA
PCEILFDAPKHPYSCELLHAEPEGEALPRDEREDVLQVRDLRVSFALGGGLFRRREYLRA
VDGISLNIQRGKTLGIVGESGSGKSTLGQAILRLIESNGSIRFQGQALDQLSQKDLRPWR
KQMQVVFQDPFGSLSPRMSVQQIISEGLEVHCPSSAQECEARVIQALQEVGLDPQSRHRY
PHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQERHGLTYLFI
SHDLAVVRALAHDMIVIKDGKVVECGASHEVFESPRHPYTQELLAAALPR