Protein Info for PFR28_01370 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06934: CTI" amino acids 82 to 762 (681 residues), 952.3 bits, see alignment E=9.9e-291

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a1947)

Predicted SEED Role

"cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (763 amino acids)

>PFR28_01370 hypothetical protein (Pseudomonas sp. RS175)
MPYRVLFGSLLLLLSFHAVAKDSVSALSYTRDIQPIFTEKCVACHACYDSACQLNLGSAE
GATRGASKLSVYDGERRQAAVPTRLFYDASGPHAWQRKGFYSVLDAQGSQAALMARMLAL
GHGAPLQPNAKLPQDIVLGLDRDNSCPMPGQFDQYAAAHPREGMPLAVTGLTDQQYQTLQ
RWLASGAPVDQQALAPSAAEALQVLQWENLLNAPGARESLVARWLFEHWFLAHIYFKDGE
RGHFFQWVRSRTPSGQPIDLINTRRPNDDPGTRFYYRLWPVQGVIVHKTHITYGLSAARM
ARIKSLFYKGDWQVTALPGYGPERRSNPFSTFEAIPAQARYQFMLDSAEYFVRTFIRGPV
CRGQIATDVIRDNFWALFQAPEHDLYITDPNYRGQATPLLAMPGQNDDVGSVLSLWLDYR
DKRNEYEALRRDNYADVPAPSWSSLWAGNDNALLSIFRHFDSASVTKGLIGDVPQTLWLF
DFPLLERTYYQLAVNFDVFGNVSHQAQTRLYFDLIRNGAEQNFLRLMPADSREGYLDDWY
QSGGKFKMWLDYEAIDNDKPTALKLDERDPKRDFARQLLLRYGELNARPDPINRCDGAYC
SRPNIDPDLQSAEQALSRLVSRPAAGLGVIHHLPEATMLRIETAGGRREVYSLLRNRAHS
NVAFLLGEAMRYQPGLDTLTVYPGVLSSYPNFMFNIPAGQVPAFVEAMEHAEDPQAFERI
VERWGIRRSHPQFWFYFHDLSRYIQETEPLEEGVLDMNRYQNL