Protein Info for PFR28_01349 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01168: Ala_racemase_N" amino acids 58 to 294 (237 residues), 60.2 bits, see alignment E=1.3e-20

Best Hits

KEGG orthology group: None (inferred from 79% identity to pap:PSPA7_6102)

Predicted SEED Role

"FIG00953587: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>PFR28_01349 hypothetical protein (Pseudomonas sp. RS175)
MSFNRRGFLMGTLGTGVLLAGVGAWLRPTDRGGAYSDYFRQLNRELKDRGPMRPVMLIDL
DRLDHNIDVVKASVRRAGKQLRLVEKSLPAPGLLEYIGRRAETRRLMSFHQPFLNHDAQQ
FPEADILLGKPLPVRSVELFYQLHKGAFDPSRQLQWLLDTPERLEQYRGLAQGLGTRMRI
NIELDVGLHRGGVRDEASLDAMLKLIRAHPQQLEFAGFMGYDPFVGMGVPEWVASPQTLL
ARVMAIYQARVDFVRLRYPDLWHPRLTLNTAGSPSYRLHERENLSTEVSVGTAMLKPSHY
DLPSLTDHVPAAYIATPVLKRTGAVNIPALDDKSRILAWWDVNQRATFFIYGGNWMADLE
SPPGLKSNSLYGRSSNQEMVNGSETVWLGLEDQVFFRPTQTESVLLQFGDLLAVRGGRIV
ESWPVYA