Protein Info for PFR28_01287 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 143 to 168 (26 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 325 to 349 (25 residues), see Phobius details PF03773: ArsP_1" amino acids 67 to 345 (279 residues), 99.8 bits, see alignment E=8.4e-33

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 71% identity to hse:Hsero_3152)

Predicted SEED Role

"FIG006303: protein yraQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>PFR28_01287 hypothetical protein (Pseudomonas sp. RS175)
MSPISAAPDRSWSFWWKPALFLLVACVGLYYVKWSPYYLKAFVAADSHNIGNSILNDAQT
APLMAALAYAKVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGQAGFASTLRGGLFAL
PGMMCSCCAAPVAASMRRQNVSVGAALAFWIGNPVLNPATLVFMGFVLGWGFTALRLVAG
IVLVFGVSMVAQRIARPEVLPEAAVEAVAEARTIDAQPFMLRWARTLWQLFWSTIPIYVL
AVLVLGAARVWLFPHVDGAMADSLVWLVPLAIVGTLFVIPTAAEIPIVQTMMSLGMGTGP
AVALLMTLPSISLPSLLMLRKDFDARVLVTVALLTILVGIVFGLIGAVLL