Protein Info for PFR28_01163 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 981 transmembrane" amino acids 550 to 577 (28 residues), see Phobius details amino acids 627 to 664 (38 residues), see Phobius details amino acids 666 to 687 (22 residues), see Phobius details amino acids 694 to 711 (18 residues), see Phobius details amino acids 720 to 740 (21 residues), see Phobius details amino acids 747 to 763 (17 residues), see Phobius details amino acids 783 to 802 (20 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 198 to 558 (361 residues), 227.9 bits, see alignment E=9.2e-72 PF10145: PhageMin_Tail" amino acids 242 to 449 (208 residues), 86.7 bits, see alignment E=1e-28

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (981 amino acids)

>PFR28_01163 hypothetical protein (Pseudomonas sp. RS175)
MANDLKIQVLLNAIDKASGPLKAINNGSIGAARALKEARDRLKELNAQQKDVSAWRTQRA
AAEQTEQALVAARDKVRALSQQFAATGAPTKAMTKDFRAAVREAQKLKEQHQQQGEQLQA
LRSKLQGAGISTKNLSSHERQLREQISATNASISEQGKRLVALNAQQKRLAIERAKLEKT
QNLAGNMAMNGAAGLGVGYAASRPVTKAIGAFAPNEDSATQLKVSMMDGTGKVSEDFQKI
TDLATKLGDRLPGTTADFQEMMTMLRRQGLSAQSILGGTGEAAAYLGVQLQMPVTAAAEF
AAKMQDATRTSEKDMMALMDIIQRGFYSGVQPTNMLQGFSKIAPVMDTIKKSGIDAAAEL
APLLIMMDQAGMDGGASGNAFRKIFQAGLDKDGVKDVNKIMELEGKPIRFKFTDDKGNFA
GLENLFAQVEKLKTLNDEDRTATIKDLFGDDSETMTTLNTMMSKGLDGYREIQQKLQNQA
DLRKRVNEQLGTLTNVMEAAQGSWTNAMAEFGAAVAPELKEVIQTLGEVANNVGAWAREN
PKLAGGLVKVVAAVAGLAFVFGGLALTMASLLGPFAMVRYGMGMFGIRLGIVKAQLIGTR
TAATGAGANIGRLGKVWRSLVATRSAGGLLSALPAFVSSARLAAASVLPMLGGAISSVGA
AIMATPIGWLLAAIAALVAAGVLVYKYWNPIKGFFLGFWQGLVGALQPVLDSFAGLGQSL
LNLGQVVMTLPGVGAAMELLGNIARPLFSLISDGVSSLITWFGQLLEPVQDVGGAAQSMG
ERFGAVIGNMLSLLLGLPAQFAELGTQMIQGLANGITNSLTVAKEAITGAGDAVIGWFKE
KLDIHSPSRVFAELGGFTMAGLAQGLEGSQNGPLSAMTSLSKQLTAAGTLALGATAMPLA
AMPLPQFPVGAAGASSLSIDDRAPISPAPAPVHDSHDTYEINIHTTPGMDAQAISRAVRA
ELARIASEKAARQRSKLSDLE