Protein Info for PFR28_00997 in Pseudomonas sp. RS175

Annotation: putative protein YqjD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 transmembrane" amino acids 84 to 102 (19 residues), see Phobius details PF05957: DUF883" amino acids 12 to 62 (51 residues), 51.1 bits, see alignment E=1e-17 PF19029: DUF883_C" amino acids 75 to 104 (30 residues), 60.1 bits, see alignment E=1.3e-20

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_c2g34)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (104 amino acids)

>PFR28_00997 putative protein YqjD (Pseudomonas sp. RS175)
MARPQAKTAQEILKEDFQTLVSDTERLLEHTATLAGDQADELRSQIHETLLRARDTLKLT
EDSMRERGQAAVTATEEYVQANPWQSVGIAAGVGFLIGLLATRR