Protein Info for PFR28_00917 in Pseudomonas sp. RS175

Annotation: UDP-N-acetyl-D-mannosamine dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR03026: nucleotide sugar dehydrogenase
  • amino acids 5 to 418 (414 residues), 395.6 bits, E=1.1e-122
• PF03446: NAD_binding_2
  • amino acids 5 to 135 (131 residues), 24 bits, E=7.1e-09
• PF03721: UDPG_MGDP_dh_N
  • amino acids 5 to 189 (185 residues), 201.1 bits, E=2.5e-63
• PF00984: UDPG_MGDP_dh
  • amino acids 206 to 293 (88 residues), 99.8 bits, E=1.6e-32
• PF03720: UDPG_MGDP_dh_C
  • amino acids 325 to 421 (97 residues), 65.6 bits, E=9.2e-22

Best Hits

Swiss-Prot: 72% identical to WECC_YERPE: UDP-N-acetyl-D-mannosamine dehydrogenase (wecC) from Yersinia pestis

KEGG orthology group: K02472, UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC: 1.1.1.-] (inferred from 79% identity to pau:PA14_23380)

MetaCyc: 69% identical to UDP-N-acetyl-D-mannosamine dehydrogenase (Escherichia coli K-12 substr. MG1655)
UDPMANNACADEHYDROG-RXN [EC: 1.1.1.336]

Predicted SEED Role

"UDP-glucose dehydrogenase (EC 1.1.1.22)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) or Teichuronic acid biosynthesis (EC 1.1.1.22)

MetaCyc Pathways

• colanic acid building blocks biosynthesis (9/11 steps found)
• UDP-α-D-glucuronate biosynthesis (from UDP-glucose) (1/1 steps found)
• UDP-N-acetyl-α-D-mannosaminouronate biosynthesis (1/1 steps found)
• superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis (4/6 steps found)
• UDP-α-D-xylose biosynthesis (1/2 steps found)
• superpathway of enterobacterial common antigen biosynthesis (4/10 steps found)
• UDP-sugars interconversion (2/9 steps found)
• teichuronic acid biosynthesis (B. subtilis 168) (2/9 steps found)
• superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis (9/24 steps found)

KEGG Metabolic Maps

• Alkaloid biosynthesis I
• Aminosugars metabolism
• Ascorbate and aldarate metabolism
• Benzoate degradation via CoA ligation
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of type II polyketide products
• Biosynthesis of unsaturated fatty acids
• Bisphenol A degradation
• Butanoate metabolism
• C21-Steroid hormone metabolism
• Fructose and mannose metabolism
• Glycine, serine and threonine metabolism
• Insect hormone biosynthesis
• Linoleic acid metabolism
• Nucleotide sugars metabolism
• Pentose and glucuronate interconversions
• Polyketide sugar unit biosynthesis
• Retinol metabolism
• Starch and sucrose metabolism
• Tetrachloroethene degradation

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.-, 1.1.1.22

Use Curated BLAST to search for 1.1.1.- or 1.1.1.22 or 1.1.1.336

Protein Sequence (423 amino acids)

>PFR28_00917 UDP-N-acetyl-D-mannosamine dehydrogenase (Pseudomonas sp. RS175)
MLFQTISVIGLGYIGLPTAAIFASRKRKVIGVDVNRQAVDTINRGEIHIVEPDLDMVVHA
AVTEGYLRATTQAEPADAFLIAVPTPFKGDHEPDLSYIESASKAIAPVLKKGDLVILEST
SPVGATEQMAAWLAASRPDLSFPQTHGENSDIRVAHCPERVLPGHVLRELVQNDRVIGGM
TAKCSEAAVELYKVFVEGECVITSARTAEMCKLTENSFRDVNIAFANELSIICDKLDINV
WELIRLANRHPRVAILQPGPGVGGHCIAVDPWFIVSSTPDEAKLIRAAREVNDGKPHWVE
DKVKLAVAEFLQQNSDRTALDVTIACFGLAFKPDIDDLRESPALAISQRIAAAHPGCVLV
VEPNIEALPIELADKKLTLKSIDQALAESDVLVLLVDHKVFRSIPAAVLQKQKIIDTRGI
WIS