Protein Info for PFR28_00897 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 PF03070: TENA_THI-4" amino acids 34 to 154 (121 residues), 31.4 bits, see alignment E=1.7e-11 PF14518: Haem_oxygenas_2" amino acids 55 to 214 (160 residues), 41.5 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a1541)

Predicted SEED Role

"Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>PFR28_00897 hypothetical protein (Pseudomonas sp. RS175)
MIDTFNRTGPLMDATSYPKWAQQLIIDCSESKRRVVEHELYQRMRDNKLSARTMRHYLIG
GWPVVEQFALYMAQNLTKTRFARHPGEDMARRWLMRNIRVELNHADYWVNWSAAHGVTLE
DLQAQQVPPELHALSHWCWHTSSSDSLIVAIAATNYAIEGATGEWSALVCSSGVYAAAFP
EEERKRAMKWLKMHAQYDDAHPWEALEIICTLGGMNPSRALQAELRQAICKSYDYMYLFL
ERCMQLEQEKVSSTRERLALAGS