Protein Info for PFR28_00850 in Pseudomonas sp. RS175

Annotation: Signal recognition particle 54 kDa protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 1 to 317 (317 residues), 248 bits, see alignment E=1e-77 PF00448: SRP54" amino acids 231 to 419 (189 residues), 158.3 bits, see alignment E=9.6e-51

Best Hits

Swiss-Prot: 83% identical to FLHF_PSEPU: Flagellar biosynthesis protein FlhF (flhF) from Pseudomonas putida

KEGG orthology group: K02404, flagellar biosynthesis protein FlhF (inferred from 97% identity to pba:PSEBR_a1496)

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>PFR28_00850 Signal recognition particle 54 kDa protein (Pseudomonas sp. RS175)
MQVKRFFAADMRQAMKLVRDELGAEAAIIGNRRIAGGVELTAALDYKLSALAPRVPNMEL
EDELRKTQSRIASAQAELSLRSSEGEAAAGTNRQLFAGQPLTAGLPLTAAEPLIEPTPAE
PRRPAPAPAAPAPGIDPRALDSMRFELNSLRELMEVQLGSLAWNQLQGSRPAQANLWRRL
QRIGLSGPLARDLLALINDIEEPRQAWRMLLAHLARMIATPEVEPLEEGGVIAMVGPAGM
GKTTTLAKLAARYVLKYGSQSIALVSMDSFRIGAQEQLKTLGRILNVSVTHVDPGQSLAQ
ALEPLLRKRVVLIDTAGLQASDPALRMQLESLAGRGIRSKNYLVLATTSQKQVLTAAYHS
YKRCGLAGCILTKLDETASLGEVLSLAIGHDLPVAYLTDGPRIPDDLHLPRRHQLVSRAV
SVQMQDEPSEEAMADMFADIYHSPTKQVG