Protein Info for PFR28_00809 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 688 TIGR02492: flagellar hook-associated protein FlgK" amino acids 2 to 372 (371 residues), 238.4 bits, see alignment E=9.9e-75 PF00460: Flg_bb_rod" amino acids 4 to 33 (30 residues), 33.9 bits, see alignment (E = 4.9e-12) PF22638: FlgK_D1" amino acids 93 to 322 (230 residues), 239.8 bits, see alignment E=6.1e-75 PF21158: flgK_1st_1" amino acids 340 to 419 (80 residues), 33.6 bits, see alignment E=6.5e-12 PF06429: Flg_bbr_C" amino acids 649 to 686 (38 residues), 29.2 bits, see alignment 1e-10

Best Hits

KEGG orthology group: K02396, flagellar hook-associated protein 1 FlgK (inferred from 92% identity to pba:PSEBR_a1464)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (688 amino acids)

>PFR28_00809 hypothetical protein (Pseudomonas sp. RS175)
MSLLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQTVQTTKASNQYGNVFIGSGTTLA
DVRRVYNSYLEAQLKTTTSLNSDAAAYQGQITPLDSLLSDSGTGLNGALTKFFASVQNVN
AKPGDDASRQLLLSDAQALSNRFNSVASQLTAQSETINGNLSNMVEQINNLATTVAQLNK
KIAEVSNSGGAPNDLLDARSETIRQLSTFTGTQVVENGSSLDIYLGSGQPLVMGNITNKL
EAVPDKNDPGRMGIQLNSGSSVMDLTQVLTGGEIGGLMRYRSTVLDPAMNELGRVALVVA
DQMNTIQASGIDKNGAFGSNLFSNINSTAQMSQRSVAALSNSAGSGNFNVSIEDTGKLTT
NDYKVTFTSATGYIVQRLPDGTSMGAFSTTTTPPPVIDGFSMTFANGTAAAGDSFKITPT
RNAAGSIKTEMTDSKRLAIAAPLGAAIVPGGSGTLTIPASGQPTMTTKLDIYDEATTTII
QNGIKSSMPVKVVFGVTSADGTSQAYQLLDAQGGTLSSGTIKPGQSNTLSLSVPLKDASG
NPIMDSSVPPVQRTVTFDMSIAGAPSNGAGIDISLSQPGSLDNRNGTALAGLQTAKTVDT
GSASKGISLNDAYGKLVEGVGAKAAQGKLDSAATGAILNNAKNARDSLSGVDLDEETGNL
VKFQQYYTASSQIIKAAQEIFSTLINSL