Protein Info for PFR28_00791 in Pseudomonas sp. RS175

Annotation: Outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 733 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01734: Patatin" amino acids 33 to 225 (193 residues), 125.5 bits, see alignment E=4.8e-40 PF07244: POTRA" amino acids 338 to 405 (68 residues), 21.7 bits, see alignment E=4.1e-08 PF01103: Omp85" amino acids 489 to 733 (245 residues), 52.1 bits, see alignment E=1.2e-17

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 94% identity to pba:PSEBR_a1438)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (733 amino acids)

>PFR28_00791 Outer membrane protein assembly factor BamA (Pseudomonas sp. RS175)
MRRLLPCLLLLLLPLFSHANEPAVQTPRPKIGLVLSGGAARGLAHIGVLKALEEQGIRID
AIAGTSMGAVIGGLYASGYKIDELERLALEIDWQQALSDAPPRKDVPFRRKQDDRDFLVK
QKLSFRDDGSLGLPLGVIQGQNLALLLESLLAHASDTRDFDKLPIPFRAVATDIASGEKV
VFRKGHLPKVIRASMSIPAVFAPVELDGRLLVDGGMSDNIPLDVAREMGVDMAIVVDIGT
PLRNRKQLVTVLDVLNQSTTLMTRRNSQEQLATLKKDDVLIQPALASFGSTDFGQAREMI
DAGYRATRILQARLAHLRPPEPTDPQLMAARTPSERTPVITAIRVENDSKVGDDVIRYYI
RQQIGEPLDLGRLQTDMGTLYGLDYFEQVQYRVVHKGPDNTLVINARGKRTGTDYLRLGL
SLSDDMRGDSAFNLGASYRVNGINRLGAEWLTRAQIGDRQELYSEFYQPLDVGSRYFIAP
YGQFESRNVESILDNDPVAQYRVERYGLGLNLGRQIGNSGEIRFGVGQAWGKADVRIGDH
DQPSEDFNEGFYELKYSFDSLDNVYFPHEGEDLGLSWRQYDPGLGSDQRYRQWELKLDKA
MSSGPNTFILGGRYGRTLDTAEIVTSSFVLGGARQLSGFREDGISGQNMSLMRAVYYRRL
TPRAYLPLDFPLYFGGSLERGRAWNNDNEFDSGYINAASIFLGFDTPLGPLNFSYGFNDD
DEQAVYLNLGQTF