Protein Info for PFR28_00776 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 209 to 232 (24 residues), see Phobius details amino acids 248 to 275 (28 residues), see Phobius details amino acids 296 to 319 (24 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 363 to 387 (25 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 453 to 473 (21 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 19 to 444 (426 residues), 165.5 bits, see alignment E=9.5e-53

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a1424)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>PFR28_00776 hypothetical protein (Pseudomonas sp. RS175)
MNNNNDKSLTQIETYGVEQIPDHERTAGPGDLFRLIFGGANTFATAVLGSFPVLFGLSFQ
AGVWAIVLGVLLGAIILAPMGLFGPLNGTNNAVSSGAHFGVHGRIVGSFLSLLTAIAFFS
LSVWSSGDALIGGAKRLVGVPETDLSLGLAYGLFALLVLTVCIYGFRFMLWVNRIAVWAA
SLLFLLGIVAFAPTFDSQYAGTVALGQAGFWAAFIGAALVAMSNPISFGAFLGDWSRYIP
RNTPKRRIMLAVIAAQLATLIPFLFGLATATIVAVKAPDYIASNNYVGGLLAVSPGWFFL
PVCLIAVIGGMSTGTTSLYGTGLDMSSVFPRVLSRVKATLLIGVLSIAFIFIGRFAANLV
QSVSTFAVLIITCTTPWMVIMIIGLVVRRGFYCPDDLQVFTRGETGGRYWFTHGWNWRGL
GAWIPSALVGLCFVNLPGQFVGPLGELAGGIDISLPVTLGLASVVYLALLGLFPEPAAVY
GPDDPRGKGLEPDTAESGPEPVARGFVSAGARSGPTP