Protein Info for PFR28_00696 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 20 to 51 (32 residues), see Phobius details amino acids 68 to 93 (26 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 242 to 270 (29 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details amino acids 307 to 332 (26 residues), see Phobius details PF01594: AI-2E_transport" amino acids 21 to 345 (325 residues), 236.7 bits, see alignment E=2e-74

Best Hits

KEGG orthology group: K03548, putative permease (inferred from 96% identity to pba:PSEBR_a1344)

Predicted SEED Role

"Putative permease PerM (= YfgO)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>PFR28_00696 hypothetical protein (Pseudomonas sp. RS175)
MFKVLRDWIQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE
RLRLPGSVAVGLVFALFMGLLVVFVVVVVPLLWHQLVTLFNELPGMLAKWQSLLLLLPER
YPHLVSDEQVLQAIEVLRGEIGKFGQWALTFSLSSLPLLVNVMIYLVLVPILVFFFLKDR
ETIGRWVLGYLPRERTLITRVAQEMNRQIANYIRGKVIEIFICGGVTYIGFVALGLNYAA
LLALLVGISVVVPYVGTVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLL
FSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLIKAVLDAWPSKEPVVAPLL