Protein Info for PFR28_00679 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 45 to 72 (28 residues), see Phobius details amino acids 109 to 134 (26 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 248 to 276 (29 residues), see Phobius details amino acids 308 to 350 (43 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 385 to 428 (44 residues), see Phobius details amino acids 433 to 451 (19 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details PF01970: TctA" amino acids 20 to 440 (421 residues), 491.6 bits, see alignment E=8.5e-152

Best Hits

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 97% identity to pba:PSEBR_a1329)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>PFR28_00679 hypothetical protein (Pseudomonas sp. RS175)
MDTLNYLGQGFGVAMTPYNLVTALTGTLIGTVVGLLPGLGPINGVALLIPIAFALGLPPE
SALILLAAVYLGCEYGGRISSILLNIPGEASTVMTTLDGYPMARQGLAGVALSLSAWSSF
IGAFIATCGMVLFAPLLAKWAIAFGPAEYFVLMVFAIVCLGGMAGDRPLKTFIAALIGLF
LSAVGIDANSGVYRFTGDNVHLADGIQFVVLVLGLFSISEILLMLEKTHHGQEAVKATGR
MMFNFKEAASVFIVNLRCGVLGFIMGVLPGAGATLASAVAYMTEKRIAGASGTFGQGDKR
GLAAPETAIGGAACGALVPMLTLGVPGSGTTAVMIGALSLYNITPGPLLFQQQPDIVWGL
IASLFIANIMLVILNIPMIRVFTRILAVPNWALVPVIAIITGIGVYAVHATTFDLFLMIG
IGIFGYILRKLDFPLSPVLLGFILGGLMEQNLRRALSISNGGLEILWSSPIAFGCWVLTA
IMLFMPLLRIWRRRAAQRRALANV