Protein Info for PFR28_00579 in Pseudomonas sp. RS175

Annotation: p-hydroxybenzoic acid efflux pump subunit AaeB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 67 to 84 (18 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details amino acids 426 to 443 (18 residues), see Phobius details amino acids 449 to 469 (21 residues), see Phobius details amino acids 478 to 499 (22 residues), see Phobius details PF04632: FUSC" amino acids 16 to 652 (637 residues), 606.6 bits, see alignment E=1.1e-185 PF06081: ArAE_1" amino acids 20 to 119 (100 residues), 25.3 bits, see alignment E=2.2e-09 PF13515: FUSC_2" amino acids 28 to 157 (130 residues), 43.9 bits, see alignment E=3.8e-15

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a1225)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>PFR28_00579 p-hydroxybenzoic acid efflux pump subunit AaeB (Pseudomonas sp. RS175)
MPITLQALFAPDRLALQFAIKTVLGGGLALWLALRWGLEQPSWALMTAFIVAQPLSGMVV
QKGLARLLGTLVGTAMSVVFMGLFAQAPWLFLLALALWLGLCTACSTLLRSAWSYSFVLA
GYTVAIIALPAISHPLTVFDQAVARCTEISLGIVCATAASALLWPLRVEQQLAVQALTAW
QSGMQAARATLAGDAQARKGLLEILGKIVAVDAQREHAWFEGRLGRQRARAISGLSQKLL
MLLRMSRSVRRQWKQLEPQEAEALQPWMNEVRQALDADSSTLRALRPRVMDASNDPGISP
AQSYCLARFALLLDTALAACAALKAVEEGREAADPPRTLAPHRDLSLAMVFGARSALAFL
TVASFWLATAWPAASGALLLTCVVCSLFASRENGAQIGMSFLRGILLAVPTAFVIGEILL
PQWSSFAMLCLAMGVPLFLGALGMAKPPIFATATSFCLHFIVLVSPLNAMKYDVAAFFNS
AQAMMIGVGAAVLAFKLLILRDPAWHSRRLLAATLDDLVRLTHRNLRGAESWFGGRMADR
LLQLARHYPELPVPARSRWDDGLLGLDIGDELLHLRLSLAVAQIPDNLAQTRYLDALEQV
LERGPSGDRAEALAPASAEFLQALASQPPGDALKLAQGAVVQLQNSWRAWCRQHESQSQE
HSHGLA