Protein Info for PFR28_00563 in Pseudomonas sp. RS175

Annotation: Transcriptional regulatory protein OmpR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF00072: Response_reg" amino acids 8 to 120 (113 residues), 104.3 bits, see alignment E=4.2e-34 PF00486: Trans_reg_C" amino acids 157 to 233 (77 residues), 66.8 bits, see alignment E=1.5e-22

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a1210)

Predicted SEED Role

"DNA-binding response regulator GltR, controls specific porins for the entry of glucose"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>PFR28_00563 Transcriptional regulatory protein OmpR (Pseudomonas sp. RS175)
MSSVNKSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGAGFRQAFNEAPSDLVILDVMLP
DEDGFSLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIK
ALLRRAQFGQERSGGEVLAFDEWRLDMISHRLFHADGEEVILSGADFALLKLFLDHPQEI
LDRDTIGNATRGRELMPLDRIVDMAVSRLRQRLRDTEKPPRLIRTVRGSGYQLAANVVAC
NGH