Protein Info for PFR28_00525 in Pseudomonas sp. RS175

Annotation: Outer membrane lipoprotein SlyB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05433: Rick_17kDa_Anti" amino acids 61 to 100 (40 residues), 29.9 bits, see alignment E=4.1e-11 PF13488: Gly-zipper_Omp" amino acids 61 to 103 (43 residues), 26.3 bits, see alignment E=5.6e-10

Best Hits

KEGG orthology group: K06077, outer membrane lipoprotein SlyB (inferred from 96% identity to pfo:Pfl01_1231)

Predicted SEED Role

"Outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (154 amino acids)

>PFR28_00525 Outer membrane lipoprotein SlyB (Pseudomonas sp. RS175)
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIEALRPVKIEGTKTP
IGGAAGAVVGGVGGSAIGGGRGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDG
SMRAYVQEVQENEVFRVGERVRIATVNGVSRVTH