Protein Info for PFR28_00473 in Pseudomonas sp. RS175

Annotation: Regulatory protein RecX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF02631: RecX" amino acids 33 to 149 (117 residues), 109.9 bits, see alignment E=5.4e-36

Best Hits

Swiss-Prot: 84% identical to RECX_PSEF5: Regulatory protein RecX (recX) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K03565, regulatory protein (inferred from 92% identity to pba:PSEBR_a1124)

Predicted SEED Role

"Regulatory protein RecX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>PFR28_00473 Regulatory protein RecX (Pseudomonas sp. RS175)
MTAVLDTLVAVRRTAMDLLARREHGRVELTRKLRQRGACDELIETTLDRLTQEGLLSEAR
YLESFVSYRARSGYGPLRIREELGQRGLQRSDIEQALRESGIDWQDQLMETWRRKFSGHL
PVDARERAKQGRFLAYRGYSMEMINRLFSGRGLDD